FastQC Report![[OK]](Icons/tick.png)
Basic Statistics
| Measure | Value |
|---|---|
| Filename | lane3_Index18_1.fq |
| File type | Conventional base calls |
| Encoding | Illumina 1.5 |
| Total Sequences | 18872182 |
| Filtered Sequences | 0 |
| Sequence length | 90 |
| %GC | 49 |
Per base sequence quality
Per sequence quality scores
![[FAIL]](Icons/error.png)
Per base sequence content
Per base GC content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
No overrepresented sequences
![[WARN]](Icons/warning.png)
Kmer Content
| Sequence | Count | Obs/Exp Overall | Obs/Exp Max | Max Obs/Exp Position |
|---|---|---|---|---|
| CCAGG | 4121835 | 2.6100187 | 5.2507753 | 1 |
| CCTGG | 4123785 | 2.5981317 | 5.919491 | 1 |
| GAAGA | 3964905 | 2.5418115 | 5.064073 | 2 |
| CTTCT | 4092565 | 2.5401316 | 6.051903 | 1 |
| AAGAA | 3950800 | 2.5265694 | 5.1718373 | 2 |
| CTGGA | 3867490 | 2.4517326 | 9.101237 | 1 |
| TCCAG | 3763440 | 2.3652978 | 5.507831 | 2 |
| CTGCT | 3747055 | 2.3431654 | 5.247127 | 1 |
| CTCCT | 3751915 | 2.3260698 | 7.7732215 | 1 |
| CTGGG | 3540115 | 2.2497056 | 8.49859 | 1 |
| CAGGA | 3523675 | 2.2450585 | 5.540548 | 1 |
| CTTCA | 3558545 | 2.2198362 | 6.1647325 | 1 |
| CTCCA | 3487055 | 2.1727834 | 7.9325156 | 1 |
| CCCAG | 3415435 | 2.1441538 | 7.0579214 | 1 |
| CAGAA | 3248420 | 2.0646174 | 5.057227 | 1 |
| CTCTG | 3211960 | 2.0085518 | 6.6916375 | 1 |
| CTGGC | 3015300 | 1.8997465 | 5.435364 | 1 |
| TGGAA | 2908730 | 1.8553512 | 5.358682 | 2 |
| CTGAA | 2905855 | 1.8376106 | 5.9243665 | 1 |
| CTTTT | 2907235 | 1.8064736 | 5.2934036 | 1 |
| CTCAG | 2748340 | 1.727314 | 6.559668 | 1 |
| CTGAG | 2720475 | 1.7246011 | 5.1580873 | 1 |
| CTTTG | 2720825 | 1.7033517 | 5.439495 | 1 |
| CTGGT | 2665860 | 1.6814865 | 5.232473 | 1 |
| CTTGG | 2590350 | 1.6338586 | 5.626627 | 1 |
| CTCCC | 2487480 | 1.5404174 | 5.002196 | 1 |